The Data Capture menu is not configuring the ADIS16209's data ready on the correct DIOx line, according to the ADIS16209's Wiki Guide:
ADIS16209 EVALUATION ON THE EVAL-ADIS [Analog Devices Wiki]
Use the most recent version of the program (v1.17.5, at the time of this post), which will be online at the following two sites, by 1/5/2017
NOTE: Also see file attachment, for those who need immediate access. After 1/5/2017, please visit the above sites for the most recent software version.
12/27/2017 UPDATE: File attachment removed. Please visit evaluation tool pages, to access the latest software version.
v1.17.5 has now been posted to the links in the above message, so I will be taking the file attachment down now. Please visit the web page for the evaluation system, for a link to the latest downloads.