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CCES complied project fails to work with bootloader

Category: Software
Product Number: SC589-mini HW 2.1

I am sure I am missing something obvious but it is escaping me at the moment.  I have a CCES project based off the bare metal example that has all the required fixes for the SC589-Mini HW 2.1 and it works perfectly fin in debug and release when uploaded using the ICE-1000.  I have the bootloader installed in flash and it also works fine and I am able to upload my ldr file.  However on reboot I get two yellow flashes and then the fault light turns red immediately after.  I assume something in my project setup like memory allocation may be at fault.  I have done the obvious settings for the ldr file generation  but also may have missed something.

I will keep plugging away at it but any help or useful directions for investigation would be appreciated.